PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011506-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 156aa    MW: 17317.4 Da    PI: 6.2643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011506-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.44.9e-2247147198
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+ W+ Fv++++L +gD++vF   + ++
  NNU_011506-RA  47 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAYPPVQ--TVLAKDVHGEVWKFQHIYRGTPRRHLLTTEWSTFVNQKKLIAGDSIVFL--RAEN 138
                    89****************************998777777..8999*********************************************..4489 PP

                    E..EEEEE- CS
             B3  90 felvvkvfr 98 
                    +e +v++ r
  NNU_011506-RA 139 GEIYVGIQR 147
                    999999977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-3536150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2844143IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-1946145No hitNo description
SMARTSM010196.8E-1947149IPR003340B3 DNA binding domain
PROSITE profilePS5086311.43447149IPR003340B3 DNA binding domain
PfamPF023622.5E-2047148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MRRGLCEDKV GTLPNNEPDY DDDGVLENNG SDIVEKPAAF AEKPASFAKT LTQSDANNGG  60
GFSVPRYCAE TIFPRLDYSA YPPVQTVLAK DVHGEVWKFQ HIYRGTPRRH LLTTEWSTFV  120
NQKKLIAGDS IVFLRAENGE IYVGIQREKR GVGSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-3747156158267Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253698.17e-80PREDICTED: auxin response factor 18-like
SwissprotQ9SKN52e-66ARFJ_ARATH; Auxin response factor 10
TrEMBLF6GU141e-71F6GU14_VITVI; Auxin response factor
STRINGVIT_06s0004g02750.t014e-71(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-67auxin response factor 10